| Basic Information | |
|---|---|
| Taxon OID | 3300031539 Open in IMG/M |
| Scaffold ID | Ga0307380_10006514 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15336 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (35.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010650 | Metagenome / Metatranscriptome | 301 | Y |
| F012872 | Metagenome / Metatranscriptome | 276 | Y |
| F014505 | Metagenome / Metatranscriptome | 262 | Y |
| F016957 | Metagenome / Metatranscriptome | 243 | N |
| F025860 | Metagenome / Metatranscriptome | 200 | Y |
| F031874 | Metagenome / Metatranscriptome | 181 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307380_1000651413 | F025860 | N/A | MTTNNIYQVLDDLQGFAEMHGSSWLKEKLAQLEAHLAALENQSAK |
| Ga0307380_1000651416 | F012872 | AGGA | MNLHFEGNRLYYMEKEAELHRALHYLSLELGQKQEMTEEQLWDVFNICMDTSNVYRHITDYFTTLDKAILDARVTNSHLKQELLDLKHENNKLNKILDDYINEF |
| Ga0307380_1000651419 | F014505 | N/A | MGRIEKFYRQNFKRLTGFIKEYTDGSYEVASDIVQMVFLRLLEMEAEGRTNFYEEDSLNFFYVYRSCINTAFKYQRAKRKVNKVSIDEILYDTLEYEPYPEEKAALNKLINYMEQEIDTLHWYDSKMLRIHMEGTSMNKIHRESEIGLTSIKNTIKNGKARIHDTLKEHWEDYTNGDYDK |
| Ga0307380_1000651421 | F016957 | N/A | MQLRNYLKDKRKLTEGRTKVCVDVGKSGEALFKLLTNAQKTTLEEDKQHIDFHWGNMKVDVKGLKKMHLSGYILLEFVNVWGGNGWCHKNSKAEYIAFQFPEAFYVFRKNHLRTRALDLCEVYEKDKVERRNYIPYADALYKWVGRWNAQDVFTYLKFEDVEDLIFEILPYAITDKESE |
| Ga0307380_1000651428 | F010650 | N/A | MMNKMNQFLRIANARLKKVYPNKMQRRAWVAKMWRRYVERQNIEHDL |
| Ga0307380_100065144 | F031874 | N/A | MVKRCLNNLKEIFLYADSQPTEIMLGMLNFILLLPATLIELGWIPVYQISGIIAGGFQLFAVARQDINLRRNASFVSFVVFTMTIVLYGSCGYFAKSASHWGWVVLWLSSLSSVKRVTTEYYHRKWNNKV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |