NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302326_10278220

Scaffold Ga0302326_10278220


Overview

Basic Information
Taxon OID3300031525 Open in IMG/M
Scaffold IDGa0302326_10278220 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2696
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064896Metagenome128N
F098279Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0302326_102782201F098279N/AVLKQVVRQYCQENSDIPDNNPAGWQNLLAYFTAAVVMETQQLAELAQQRAVVAAAGSGKAPQIPPAEIHDVVNTVGGLMHLSPAATSGNIQGQVQAANTLIKLADTLG
Ga0302326_102782203F064896AGGAMSNVIGTASTTQQLQLEALNEVIKLLIEKEAKLDARISERGSITPVSLRSFRLRFQTAFPGNVALFNLDGGILPAGNFSAWDQGTLTPLATVIPVEYSRLVDIIGESGPKVVSESPVTKTLADVAVQMAKNRDQFLQQAGDGKIGQVDTSYAGGGANPIILASQPWGARLVSQGQQVQVMSNTYTLRGTCYVN
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