NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1001139

Scaffold Ga0272428_1001139


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1001139 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59056
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (69.81%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018372Metagenome / Metatranscriptome235Y
F029381Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100113916F029381AGGAGMPDQHPTPAPAPALKKLDVTIARLRLLVAEVIAREAAQEEQRRTCREQHNKLVSFSLYGDSTLDSVLAMLADVHERLTHVEATSRSLAAIRSRAENELESLQLTKSIEEAKVLLHELQARQAGPFDAAEALSPAEIQAEIARLRTLINEASERAAKTIPTRSRT
Ga0272428_100113920F018372N/AMSEKTKKKRAPFSVLEPQSPPIDFACPQCGTVVSVEHAGEVRECPACRHKLGRVAQLDQLLARWWEPRRWRADLVKPNVPYLIERLWTANGQGERLFTGVSPKFTNYDIFRNMVTRLMIRGIDEGWAELTFPADPLAEDPQYILTIVDSDRFAEGVEKLFPEVDWDEPVSLALSEATPSETAPEDAKKHKKNKKK
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