| Basic Information | |
|---|---|
| Taxon OID | 3300031515 Open in IMG/M |
| Scaffold ID | Ga0308396_1005206 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4882 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000642 | Metagenome / Metatranscriptome | 965 | Y |
| F002372 | Metagenome / Metatranscriptome | 566 | Y |
| F002795 | Metagenome / Metatranscriptome | 529 | Y |
| F002978 | Metagenome / Metatranscriptome | 516 | Y |
| F004024 | Metagenome / Metatranscriptome | 456 | N |
| F008135 | Metagenome / Metatranscriptome | 338 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308396_100520610 | F000642 | GGTGG | MQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERAREAAALSSLWRGGGQWLDLLRVLGVVLPAAFAYATWAHVASLQALVAQILALVGER |
| Ga0308396_10052063 | F002372 | AGGGGG | MPTRREDALWSVVHQRSAHLRALLDGLDDVDISIAYELHYYPYAIVELLRVREDAPPLVLRSAYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA |
| Ga0308396_10052064 | F002795 | AGGAGG | MATNDGLVLRGMIAAYREFVSRTNGKLYRVITVYGDLVAGEAVLCTVDGYDVFVDAPGYARGELVELPARIQFVRDSSGRPALRLYVDEGVR |
| Ga0308396_10052065 | F008135 | AGGAGG | MRAMDDFRTERLLISVGRDIARALDERQRHAIVLAVDVVWYIVAALPPDEHMTCRDVVRLLRWFRKGLQEREEDDGDE |
| Ga0308396_10052068 | F004024 | AGGA | MPSERDYLRQPSSLTDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYMRRRDERRSDR |
| Ga0308396_10052069 | F002978 | GAGG | VSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDAGDPDSVALARRAIATLRSAGADCSALPAVLPGSPGAPGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |