NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308010_1052765

Scaffold Ga0308010_1052765


Overview

Basic Information
Taxon OID3300031510 Open in IMG/M
Scaffold IDGa0308010_1052765 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1662
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018266Metagenome / Metatranscriptome236N
F026154Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0308010_10527653F026154AGGAGVNGIFTVIRFVTYTLGGLAIRRGWNWLIEDVDPIPGSKEFEEEYMRTSIKYNRLTKKKEQHETYRKSR
Ga0308010_10527655F018266GAGGMYRVIIEGKFRENPINLARAVKLLYNQQFTGSIRKENILWWKKYFLKVIHLRILYPKMGYIQIVKVYRDKIPSIRVVTVPTSSDKRELLVLNKIYGGDNEA

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