NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1005583

Scaffold Ga0272437_1005583


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1005583 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15330
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009446Metagenome317Y
F042663Metagenome157Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_100558316F074201AGGAGGMDTVDIMPTPTACRQIARLFRAQQTHSEALIARASRALDTLDATDDDALAPWDRALLAAAFEALHDAERARVWHMGEGLEAWGPYADADDGEGSDDAA
Ga0272437_10055832F009446AGGGGGVSDLGEDLARAYEARVAAADVELTPAAIRAVVRELGGGEGRAQVAAGNKELAGQLGISVRTVQRWQKEGGEARSVARSTPGLRLSVRGIATEVQRAANARAFRERVQEQGLDVGGCRVLVRIYNEDRARGRTIPGQHLEGDALTEFLEAREEGDREAAAEAFGDAWLESYGMDVEASVTDVLSAFTSGL
Ga0272437_100558320F042663AGGAMTSQAIPITYIAPSVLSIPPRPRTTIALDDGDVSVTVTFRPTAPIGSTEVVASLDGLDDTALLNLVDSAIARLSAYHAAYQQAMTEDAAPAPISAPLPLPVPWDAQ
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