NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272448_1003137

Scaffold Ga0272448_1003137


Overview

Basic Information
Taxon OID3300031463 Open in IMG/M
Scaffold IDGa0272448_1003137 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-019-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19917
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5676Long. (o)-110.8075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y

Sequences

Protein IDFamilyRBSSequence
Ga0272448_100313712F002448GAGMIHPKKLLGEWVTALQALPRLVEALGGNGNHIQAYSENTVVFGQPTQNNIRLAILSMPPGSILIAWQGSGPGRLGNALVFVHDFSLYLRAPETAEVGYEDLFNWIVNDAPVGSLRMLHTPIDPNCEPMDFYLPSARRNTIVISADGATFEYFEVPVKLVESYNP
Ga0272448_100313713F007212N/AMSDCSTIGASVNAAMQDAFGEPVVYQPVQGGFPAGNPLTVIAIRHVRVREESGAMGPVEEISVNPADFPNPPQPGDWVTAWGSQFVVRTVRQPDPYGMVQLSLFARKSADDPS
Ga0272448_10031373F000335GGAMPASLCTAFTEVREYSQLQNQYHDGTIHRSQLVQTSRRTFRQNKRLSASAVAALYNFLASHNGGLTPFAFYNPFDVAAGQQIGSNYDPTGNGTQGRVTVVFRCDWAQSTDLCRSNVQGLELVEVA
Ga0272448_10031376F000451N/AMSRFQTVIRRARFVYSPFTTQEMQGFAQGLADTIRARIQSGQNIYDQAAAPLKPGKPGRKGYPEYKVARGRQPIRDWTWTGHTLRCLKVLTVNENRAVIGFLDEAMPGRRQTASEIAFYNNQRERQWGVSPRDRDALLKLMLKHRPIVTVQEARTA
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Institute for Fundamental Biomedical Research
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