NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1000621

Scaffold Ga0272438_1000621


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000621 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53756
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (88.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018488Metagenome234Y
F034417Metagenome174Y
F035137Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100062116F018488AGAAGGMREPTRRPPVSGPGWNERAAVALLVLVAGHLLAVEPPAVAGPLTPDRLARVVAAHDLPALVAVCEGSPSDQVRHGAHQLRRLIRAGQAQVYQRVLPGLPVALVDPYFRLDLARAAARAGLDLFPPPRPGG
Ga0272438_100062142F034417AGGAGMPWAVTKPRSAWLAQAKTAWAALAPQAPEGAQLRDLAAIDHENVAWLIEALTALKPGEVSQELQDLAGLRPVGEVLGMPDDADDGEDW
Ga0272438_100062159F035137AGGAGMRGKWERKSDTLWTYRLAGAARPYGYVVQYRDTGRSDADWDATVTTGRLDDDTTVAERVSFDKAKGAIEQYAQQHADRV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.