NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308194_10117042

Scaffold Ga0308194_10117042


Overview

Basic Information
Taxon OID3300031421 Open in IMG/M
Scaffold IDGa0308194_10117042 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)787
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F012223Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0308194_101170421F001079GAGGMEASLQSPSALPYVAWSSSSVAVIPAEQWPHVFGSMQALKGHVQEYPGCQKLEAFVAPSGGDYRVHCYTTWDTPEQLEAFLERGYTFERMLDDVAGLAAEPTL
Ga0308194_101170422F000805AGGAGMGMPSGDSPAKAQAYYHYLNAHQLTMQRPATWEVRWHDLAWLWGFAIALSLILLLWVWQYRSTRQKANIYPVDSFGGYTTELAGPATAFFLILTVMLTVFAVVLIVGHIVWGQRF
Ga0308194_101170423F012223N/ALAFLAAWKAGHFQDLDKLGSLPLYVEEEDYYTPDWALDEEEWLDGDA
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