NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302187_10514313

Scaffold Ga0302187_10514313


Overview

Basic Information
Taxon OID3300031259 Open in IMG/M
Scaffold IDGa0302187_10514313 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F027390Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0302187_105143131F027390N/AATYLSMNVSGSDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVS
Ga0302187_105143132F000335N/AMPGNLIGSTPNGVMPASLCTAFSELREYAQLQNQFHDGTIQRSQLAQTSRRTFHLSKRLSASLLSALYSFWVSQNGGLTPFVFYNPFDVTSGQQIGSNYDPTGSNTQGRVTVAFRGNWAQATDV

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