| Basic Information | |
|---|---|
| Taxon OID | 3300031231 Open in IMG/M |
| Scaffold ID | Ga0170824_118939795 Open in IMG/M |
| Source Dataset Name | Coassembly Site 11 (all samples) - Champenoux / Amance forest |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1327 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | France: Mazerulles, Grand Est. | |||||||
| Coordinates | Lat. (o) | 48.7585 | Long. (o) | 6.3578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012619 | Metagenome / Metatranscriptome | 279 | Y |
| F039854 | Metagenome / Metatranscriptome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0170824_1189397951 | F039854 | N/A | VTVRPLEPGHRHEPTRRRFLAGAGLGAAGVLGTQLIGAGPALAARRAGDPRPIPGGTEFLGPGTELFHAFEPGAGEPNSITDFNGFVGVAHITGTGAGANAGLSFDVDNRFLTGEYIVLNGRHFNSTFGFL |
| Ga0170824_1189397952 | F012619 | GGCGG | MLENFEIPDFHDFGNSLTHGDPVGTGVVDMAMTWSGGGQVSHVRDPANGFTGRKVTGTSHISWTVTMGNFSFTASESGQNSLTSEVWKERNGVFFH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |