NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307982_1034558

Scaffold Ga0307982_1034558


Overview

Basic Information
Taxon OID3300031224 Open in IMG/M
Scaffold IDGa0307982_1034558 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2491
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014582Metagenome261Y
F015658Metagenome253N

Sequences

Protein IDFamilyRBSSequence
Ga0307982_10345581F015658N/ALNDKLFNDKVVGSGYGIVNQDPYLTIGKYLVHKNNLLCGKLQVRSPINHNQVYGFKSQKITNNIKYILLKLHKKDPISFKDVDKLNEGENNQLCMIGKKSYVSELFDIPSTTKSNEDELTDEFYLLRGSILAGNNNPKLLRKYKIVLLKMKNNI
Ga0307982_10345584F014582N/AMSSSIIINANNITDSVTNSVFQVNFERSVNLVDKHISLTSASLFFSWRNITTQNNKFSYTWNDDIEYFVEIPIGLYEISDIRSYFQFVMSQNNHVMTNTETGSTIYFIDFVVSNTNYSIEILTYPTGFTSNISFIGTEKNPRLTLPVGINAIFGYAEDFTTDAGSSIITFSSTIAPNVSPDNSVLIVCDQVLNEFSNLGIIYALFPSVGIGSLIVDKPAYPIHSKLRYGNYNHLTFQILSSKSFRPIELIDPEINFIFSIK
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