NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1003209

Scaffold Ga0307974_1003209


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1003209 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11726
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F002411Metagenome561Y
F025890Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_100320912F000607N/AMRVDNSTGKGMSGMDKFSSEVHRVHMELRGKLLDSLRIETQILGRHQSVNVVDGAAHTQKDDVENTGGSLKNVAEVFVLLLCGVQLVLRSGVLTILDLDKVYVTPSLVEVFRLVLSGVGGGSTGGWRCC
Ga0307974_100320914F002411GGAGMVIRSLLPISMETMHDPKEPVFLMTLRIMWHAMLCLSVIMLLICVCWHPERMCRALSTCGQRRQV
Ga0307974_100320915F025890GGGGGMGHVCCMGMIMGLCLVFYVFFCKPVDVVEGISLRACCSDGGVCNVGVGGG
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