NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1003162

Scaffold Ga0307974_1003162


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1003162 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11789
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F029619Metagenome187Y
F100125Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_100316212F000607N/AMRFDNNTGKGTSSMDKFSSKVHRVHMELGGKLFNSLRIETQFLERLQSVSVVDGAAHTQKDDMESNGGSLENVAEIFVLFLCGVQLVLRSGVLTVLDLDEVGVAPSFVEAFRSVLSGVGGCTSRWRCC
Ga0307974_100316214F029619GGAGVLEGRHGGLVGTRAFGEENGPCLLYGYDYGFVFGNLRLLLQASGCCKRDPPQGLLF
Ga0307974_100316217F100125GAGMVNGMADGEPRETGGEGIGVCLKHFVPWVLTPVMGEFGVIVKVGCHF
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