Scaffold Ga0307964_1023558

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307964_1023558

Scaffold Ga0307964_1023558

Overview

Basic Information
Taxon OID	3300031210 Open in IMG/M
Scaffold ID	Ga0307964_1023558 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #596
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1185
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.4561	Long. (^o)	78.1899	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002703	Metagenome	536	Y
F008667	Metagenome	330	N
F034413	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307964_10235581	F002703	GGAG	MSTASLADKLTHAKRESKALKAQLQASKLKSEELLAAFDKSVYTPEAMARRNMFKRAKDKYNER
Ga0307964_10235582	F008667	GGAGG	VTPGSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTVHDVQAMRLNVHGRTDRQQAIVFGVSASMVYKIHKGERWGVVR
Ga0307964_10235584	F034413	N/A	LCGFGLGSRYGGARRLDKPTDLISQVMAGTADYNFLPKALQSAIRLPIYTRACAVLAEPTRAARRAKLDAEPESVRALVEAEALRLHKLRPKGLQ

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