NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1012835

Scaffold Ga0307931_1012835


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1012835 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3396
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013136Metagenome274Y
F028317Metagenome192Y
F087871Metagenome110Y
F102232Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10128351F087871N/ASNLNIGLSERLQYIVDDTGETLDGIATSSLSNLISKTELSKLYVSHLSTKTAGVSADALTNTLLVSPVLQYSVKATIMLKDIHPLFEVMPISKSLNFKIQIFWNNSIATATHNNNIWTGQTSQFRAYNGTLPLMLNNYTDGFATAPAGTLRASVYVDDTCYDTTQRTAGTLATGGVGKQVELHVQAVQMLPDIESNYAQNHLRDVS
Ga0307931_10128353F102232N/AMNVSLNLSPGQLSKLRNGHGIRVSRAMFGSGVDMIIDPMTYNNMVKKLERGKGAVISMSGGEIEQNRMEGTGLFAGSGNKGGKISRIKKARKWRDFSDETLRKDIDTGRYCYEQLKEATNPIKSEGKKALRGLSKMFGGELDGDEMEGEGFF
Ga0307931_10128355F028317N/AMLSNFDISELVVKLNIPNFKGCFYKNTLKKIEPSSSYIINLNSEFNEKNERNAGSHWVALLTDYLLWRVRT
Ga0307931_10128356F013136N/AMSNLCGFFCLAFIYFLTVSKHRTENIINDASIFLGLFEDLDLVDDIYKNEFVLSLFFTDKKSKKLLYDDNNIGMNKDNKKDNRFNIEDKPLSL
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