NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255310_10139536

Scaffold Ga0255310_10139536


Overview

Basic Information
Taxon OID3300031197 Open in IMG/M
Scaffold IDGa0255310_10139536 Open in IMG/M
Source Dataset NameSandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)663
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: Vancouver, British Columbia
CoordinatesLat. (o)49.2598372Long. (o)-123.2459363Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009097Metagenome / Metatranscriptome323Y
F058905Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0255310_101395361F058905N/ATSPRRRRLPAKVERNPPAERRPARVSARDLAGTVRQLRSRLEGLEEEQEQLRAELALLRGDAEAYEGMTPSIFVTGWFRATLILIVLAIVVVISVPWLMDIFEGGARESRPPARNEAPAPSPNPIPSGR
Ga0255310_101395362F009097N/AVIVKDNPLDTIVLRWLARVPRLQTDRIIAGRYASGEECKAALDRHLVTVKAINDSWSGHAFEREGDTGTIHYHPAGIEYARVALRCAEQ
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