NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308020_1293382

Scaffold Ga0308020_1293382


Overview

Basic Information
Taxon OID3300031175 Open in IMG/M
Scaffold IDGa0308020_1293382 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #349
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014788Metagenome / Metatranscriptome260Y
F088823Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0308020_12933821F088823N/AVAGQNGQDGINVAMSYVKKFSGACGFLWMKNPKCYNANGSKKDMKAMYANNGDDNLTKHGLVYDLETDKFVPIKK
Ga0308020_12933822F014788N/AMQKEIYKEDYFGTLMSVLVDESRRMMSTFNPTAETHKIQNDMCKAGTWLDSMPANTIVQSPPQDFVNKLEEQTLPEYRRLAATLIEHFIKE

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