NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1009327

Scaffold Ga0308025_1009327


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1009327 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4068
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F007827Metagenome344Y
F042015Metagenome / Metatranscriptome159Y
F087890Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0308025_100932711F007827N/AMKLTNKQKRSIKRRVNLDLGINVPTTRIFVSKKIYTRKIKHKLWKK
Ga0308025_100932712F000126GAGMGRSNNGDINHNDNDNKMSKRDFKITKKDGEWYNTIVTDSYGKVYQNWYETASEASKWVMYIWEKEDWFNSVNSEELLYKAIQQCKAIDKEKGIGSIL
Ga0308025_100932714F042015N/AMKIDKVRAHREELKRLLFSVPTEGRKVTKTITVTMIKGIDGKPNQWWPGYGHVSINSDGPDGFCHFSTSQEHPMKYALNTKEYKSGEYSLIIK
Ga0308025_10093273F087890N/AMKKFLKKRSGAIMLGLGAGILTLDLMGISGVVTFAIGVILIVEGIDKV
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