NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1005488

Scaffold Ga0308025_1005488


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1005488 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5410
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F018962Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0308025_10054882F004606N/AMKTHRIFNKGQTVYCLLASHTNPNILLPVKGTILDSKWDPVNPLYQIRIIKLYDNMKFLKQHFFDMNFRHVFENRARKMILKAEDYKTTRALEDRLNDKDRERFYVVIESVMCTKTKVGLSDLFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSVKEFDIKYKISWTDKFKKGGLDIDKYLNSLG
Ga0308025_10054883F008190GAGGMEEHIEFNFIYSDDALRVKTFLGNVPRSIECINYMDIFNKLTKNDYYQFEPSDAVVSSYLMRQLQNAIGRNVSTTIFYVLGNLNKETVGGIQDYVESLSDKPITYKIYHSPDIIVNGTAELFDDIIEFE
Ga0308025_10054884F018962N/AMVKIVLESARNGVIKKVIDDNYGGGKEHFTSTDVYESTEERKSNENTYIKRFFFDLCDDLGLELGSKFDKDVLDINTCWGSHYEPTVKDIESKIKRLKIELEELEEWKNI
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Institute for Fundamental Biomedical Research
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