NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1000101

Scaffold Ga0308025_1000101


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1000101 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45286
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (94.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F002322Metagenome / Metatranscriptome571Y
F002542Metagenome / Metatranscriptome550Y
F018181Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0308025_100010114F000375AGGAGMTKLRDLEPMIMDCWSVCNDLETVFRQIGDGERDPTPDELMNALMGMQQVYQWKFEQLFNKYEELL
Ga0308025_100010155F018181GGAGMKSLVKVNPSYQNKIDSLELSIEDAIRDKLERIAKTAVNLSPVDTGAYVTSFSFSVGSGRPRGKSSDNKPKGQNVGSMRQEGISNLLSDLNKITDLRNTTSITLRNGSPHALDVENGGPSWRRSGYKVFAQIGNIYG
Ga0308025_100010158F002542GGAGMHPSHLGWQVDWPVFVKLPVSADNTNWKRGDHFNWLERGMQQDKVATLYATGYLHHNTELEIQNKVGDRLSELAASQLETLVNLLNAEVKSRTSSKNEFESKKCKKSKIDDKQRGLIRRFLNANSWVMEDFYTIRDGILTD
Ga0308025_100010167F002322N/AMLEKLPYSKLVEKAVIEMIQGGVPIRQIITSIQHLNDAPKSLSTLYKHYGPAIEAERTRISGAVGKRVIDQALYGDVQDGITWKSQELFLRSKGGWSPQNTVNEVDQEIDPELDVSAADQLMNLLGFDLDDEQEDNG
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