NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170822_15662098

Scaffold Ga0170822_15662098


Overview

Basic Information
Taxon OID3300031122 Open in IMG/M
Scaffold IDGa0170822_15662098 Open in IMG/M
Source Dataset NameOak Spring Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1290
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022301Metagenome / Metatranscriptome215Y
F063885Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0170822_156620981F063885N/ANHDGTFKAGVDDASVIRQWVDAFKQKREQLASGRCEWKEKPADLTVIDNPMGLATVPNYCSAKPF
Ga0170822_156620982F022301AGGAGMVRRYTFYVLLVFIAVGTVAAQTQGCEVPDGMTKEQKLPCVRAGRMLLDQPTLSPTQLANGPGFDSAEPEKSRFAYSTADDTIGCYFRPHYAFAKVPGDSMKFQCWHMTADGAFYNRKGETVRVDDVKVVIEKDKSGEKSASLYARTDDKNEHEIKADHFKIKYLKPPYPDHNPRFNEVFTAVATTRIMWALGFPADYVYPAGSVNCVGCTDDPFGQKLTDNKASLKDAPAVFKVVNVERELPLDQINPEDDETWSWTDAAKFYSDGEWTHQQKVEFDAYRLALGLIHYYNALPQQNRLVCAEWETVEAAHSKVCRKPMIYVHDLGSTFGKKRSGFDLLGTNPRGIFDAYE
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