NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170822_11813603

Scaffold Ga0170822_11813603


Overview

Basic Information
Taxon OID3300031122 Open in IMG/M
Scaffold IDGa0170822_11813603 Open in IMG/M
Source Dataset NameOak Spring Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3273
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001496Metagenome / Metatranscriptome683Y
F002603Metagenome / Metatranscriptome544Y

Sequences

Protein IDFamilyRBSSequence
Ga0170822_118136031F001496N/AARNIRECVEALLFVADRVPSSPLDFSLIVCCKDLWKLKTSEPSMPILEKTTRFAAIALAILFIGLSLFGIFGAWFVDRRATDVVLKLFGLIETGVGVVNAGVARVDDLIATSRTEVRQASETITAAGAQAQANSPVLNALNERLETGLAPRIAQIKQVLAPVRDAVGTIGNAVSLVNSVPMMADRAPRLAALDETFNRLEELSADATQLRSTLRALVVAQKSDVTAETVATLNRLTQRIDTRLGEVQAKVQGVQADIAALQVRVDTRKSQLLFVFNLLAVLCTLMLAWIIYSQVVVVQHHWARLRRSATKAAPSDEPAPTVD
Ga0170822_118136033F002603GGAGGMTAILVRFPDESVKLDDVEEPRVLTTLEVIYEGGSLHSKTADFATRDLERLVVGVHGGNWHFFETYERTICVDIRSRRTIFRYAGLTSKPDNTSWWKRLLAALRIRQLNAIEILVLFTVANVCGN
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