NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308193_1025244

Scaffold Ga0308193_1025244


Overview

Basic Information
Taxon OID3300031096 Open in IMG/M
Scaffold IDGa0308193_1025244 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)790
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F012223Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0308193_10252441F001079AGAAGMAAGAPSALPYVAWSNCTIATIPAAKWELIFGSLQALKAHVQEYPGCQKLEAFVAIQDNGDVLVHAYSTWDTPEQLEAFMERGYTLERMLADVGDVPAV
Ga0308193_10252442F000805AGGAGGMGLPMMGMPSGDTPDKAQRYYHYLQGHQETMQQAATWHVRWLDLAWLWGFVIALVLAILLWVYQYRTTRQKIYPVDTFGGYTTELAGPSTLFFILLTIVLVGWAVALTVGHLVFGQKF
Ga0308193_10252443F012223N/AAVVAFLAAWKAGHFQELDRMGSIPLLVHEEDYYTPEWALDEEEWD
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