NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308189_10088743

Scaffold Ga0308189_10088743


Overview

Basic Information
Taxon OID3300031058 Open in IMG/M
Scaffold IDGa0308189_10088743 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)955
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001079Metagenome / Metatranscriptome785Y
F007262Metagenome / Metatranscriptome354Y
F021376Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0308189_100887431F007262N/AQYRSTRQKANLYPVDSFGGYTTELAGPATFFFLLLTLGLTAFAVVVIVGHLVWGQKF
Ga0308189_100887432F001079AGAAGMEATLPISSALPYVAWSSASMAVVPAADWPLVFGSMQALKGHVQEYPGCQKLEAFVEPAGADYRLHCYTTWDTPEQLQAFLARGYTFERMLDDVAHLKAEPPRMMEKIF
Ga0308189_100887433F000280GGAGMADEPGQRPGRPLVGYRDVGEDVRHTRGTVIRAWVIIAAIALLYLGWTLTVYFLEPGLR
Ga0308189_100887434F021376AGGAGGVYIKHLTSLQFLTYVSFFAVVLAAMFRFIPGRSPPVREEPYPEDELHAHDPKVAKYFLAGGFFLVLGSVHMALKNLPWIADYLAR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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