| Basic Information | |
|---|---|
| Taxon OID | 3300031040 Open in IMG/M |
| Scaffold ID | Ga0265754_1004895 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 885 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.997 | Long. (o) | 10.7902 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001698 | Metagenome / Metatranscriptome | 650 | Y |
| F008441 | Metagenome / Metatranscriptome | 333 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0265754_10048951 | F008441 | N/A | WDDVRRLADFLAGSGEQSAAADLRIQLGKAVFQTHSEQLRSISNTMPPTAVGEAIDALRAVLRDVPEEFPDRNREVNRFLAPLASAIHAIMKDQDIDIPLTSRVEHIATGGVAKYPDIVKISLDELAAEFEGTCS |
| Ga0265754_10048952 | F001698 | AGGAG | MAGVINDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGEALEEVTPGIAQYLSATEGHEAHLAALIERLRGYLETGAGAGLGVSGMSRSETSRGTGRGTERRD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |