NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302308_10425056

Scaffold Ga0302308_10425056


Overview

Basic Information
Taxon OID3300031027 Open in IMG/M
Scaffold IDGa0302308_10425056 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029195Metagenome / Metatranscriptome189Y
F038316Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0302308_104250561F029195N/ACFQESGLPGTARALDQSCSEMSSVQEQLVNVLREVAHPDIGVIAKTRNANDSLLRSMTTRAQQMDNFLVRLEKQIWAVWLPVVATAALALGFALGTWFANVRQGTPEASSAVQSQQMPTPEAQQVVRQRNAKHH
Ga0302308_104250562F038316N/ADPHGVVTDHDGLAMYGDFRKVAEPRELVGQLANLFVVITRHRKDFLAANLLAVLQSLRLAPDAEIPEEIEDVIGLNGGVETVEDRLIHFLDASKRSITVADYVVMPEMKIRSEPYVRHVSCDSLAI
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