NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265773_1013871

Scaffold Ga0265773_1013871


Overview

Basic Information
Taxon OID3300031018 Open in IMG/M
Scaffold IDGa0265773_1013871 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9989Long. (o)10.7903Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004392Metagenome / Metatranscriptome440N
F050789Metagenome / Metatranscriptome145N
F099394Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0265773_10138711F099394N/ATIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI
Ga0265773_10138712F004392AGGAMPVNGPETISDLKTSQPVASEGRSVRATRDAKPAVGRGAATRRRRDRQESSQTNGEERFFLATANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS
Ga0265773_10138713F050789N/ASMSGLLRRAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTGTHDGRAHMDAGEKQDIARKETVERCQ
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