NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265740_1014261

Scaffold Ga0265740_1014261


Overview

Basic Information
Taxon OID3300030940 Open in IMG/M
Scaffold IDGa0265740_1014261 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F020633Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0265740_10142611F000781N/AMLTVAQLAPIKDRDPYLYETLTKIVASVNATSQAAGVDPSTPAPAPTAVASINVQASNGWFDLSVTDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVAGGGTTGPTPLPSSGSG
Ga0265740_10142612F020633N/AGNLSLTTFVDSQSAPQAQQPLPLSSPSLEDLELPINVLGERVAFQVSTNQPGAWFKLQKFTPSVRVDPWAPVRGVN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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