NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310039_10050188

Scaffold Ga0310039_10050188


Overview

Basic Information
Taxon OID3300030706 Open in IMG/M
Scaffold IDGa0310039_10050188 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006230Metagenome / Metatranscriptome378Y
F033880Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0310039_100501881F033880GGAMESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHAAAVALLWTVTLSWIRQQKILDPTAFDRSSLVTYSPEEYLPPLDTGASEAPKMETGDPAYAKQPILSVPPEADNRSQTIVVPPDLKLDRDVALPNIVATGAIVPAVPLDATQSPLTRMVAPETQVVAPAPEVEFAPDRVVRAAMKSDVIAPPPEVTPHHTRGVAGPETAVVEPPPQLTQSTKGHVGPMNIGPSEVVAPAPQLTLAEQHSLAARGRGRLPGGGVQPVGPPPSVAAAGSASGGGRLIALGIHPVAPTG
Ga0310039_100501882F006230GAGGMPIHTTRFYALQLACFVLSAWMLAGAQAKVDGQKNDRQNQAPSPATPGADYSGMYSFLRDGEFVQVTVEDHGHVIGFVSRYADPEGDGGFLDHFFKSGKLDGNQLAFTTETAHGVSFEFRGTVERGEGKSRGDEAYYVLKGTLVEYTTDQAKKTSSRSREVALKSFPQDMAPPQAERK
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