NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302313_10311197

Scaffold Ga0302313_10311197


Overview

Basic Information
Taxon OID3300030693 Open in IMG/M
Scaffold IDGa0302313_10311197 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)628
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002012Metagenome / Metatranscriptome604Y
F018421Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0302313_103111971F018421GAGMAERRVIFFDIGNTLLFPNRAKMLAPISADRHPMLEQWQALERRTKTEFDQGMQSGRVDHGFWRIFH
Ga0302313_103111972F002012GAGMALASTTRLIAGCVRSKFAALSVYALMHIPSAVLAAVMLLQRHSSRRSDVYNILWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLIVLISIF

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