NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302046_10138133

Scaffold Ga0302046_10138133


Overview

Basic Information
Taxon OID3300030620 Open in IMG/M
Scaffold IDGa0302046_10138133 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1998
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002666Metagenome / Metatranscriptome539Y
F003507Metagenome / Metatranscriptome482Y

Sequences

Protein IDFamilyRBSSequence
Ga0302046_101381331F002666N/AMGKVCVTLVRQTETHLLELGQPVLALAQAAEACLHGATHLAEEQRARLDTQLRATLEAHRRIEQQSRRLTQGKALPSCKIVNAYDPTIAPICKGKSNCPTQFGRKPGIIADPAAGFIFALHLPVGHPRDASSVEPLVDHVERAIALVETRPTLAMHSLAGDLALNDAALREALHARGILTVGIPKTVDPLPAAPTPEEVARMLDESDLHGIRTPTQVQLAYACGYSRPVVESIIASLLCRGAAHLTYKGHRGAIVHTGMAVMAHHAATLVRIHDYRLSKRARRFRRKLRLRCRKLNQCNTSIN
Ga0302046_101381332F003507GAGGVDRSQDHFVLPEVLAHFRSRLDAPLMEALLAIQAAAAMEDGLVSPAHLVVDTFPSEQGSQRVNDAATLYKAQKKSSRSSRP
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