NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311355_10364558

Scaffold Ga0311355_10364558


Overview

Basic Information
Taxon OID3300030580 Open in IMG/M
Scaffold IDGa0311355_10364558 Open in IMG/M
Source Dataset NameII_Palsa_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1426
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000682Metagenome / Metatranscriptome939Y
F033133Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0311355_103645581F000682GGAMFSKTVYGTTFKDVNFVPLQSAAFCVQCELISTNSRPYCLACGSPSLLSLSRVLGGTLRQQQTAHLITDSELDSLVRDLLRTVPDPDFLNVADHPTRVPMLALRSQLRVANAAHPVSGFRMVHPGEEVDIHAAELDLEPAISAITERAQHLTG
Ga0311355_103645582F033133N/AATEELKAVRDYEQIRRVLEAAFSSNDFDGFDVKFRLFPGESQPVDDSEPSMQPRRGEVSFHWGKTRGARSLEGLAVWTLSLDLVSSSNRRRGALAVHRLYSQRDLQLDINLLTTAFPIALADALDRTLQHTVQVIPRASQDDQGFVAAQAG
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