NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000940

Scaffold Ga0272420_1000940


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000940 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36789
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (96.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035137Metagenome172Y
F075492Metagenome118Y
F078022Metagenome116Y
F094623Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100094028F094623AGGMSTTPVIRWMVRSPYLLEARVTTTDGTDLYAGYVAVTPGTDDWRGYVGPGFVPLGSGPRTVMQRAVAQRIAELLQGDDVATKGCLDTK
Ga0272420_100094029F035137AGGAGMRGKWERKSPALWTYRLVGAPRPYGYVGQYKGSGRSDADWDATVTARRLDDDVTIAEGVSFDEARAALEQHAQQHADPVDGAGDKGTGL
Ga0272420_10009404F075492AGGMSDYPNYPAYPDPTGATRGSSADDTTTDEILAVIATEEPRGATADQITIAIGLGFDGTLIRDTLEELVDCGLLNQFGIGHGTVYTLNPRT
Ga0272420_10009405F078022AGGAMPDDEYITFAEARKLAGLKNSVSLRRAARTGRLNTVTTATGPEPVRLTTRAWLQEYLDSQRRET
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