NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302185_10091412

Scaffold Ga0302185_10091412


Overview

Basic Information
Taxon OID3300030508 Open in IMG/M
Scaffold IDGa0302185_10091412 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1106
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027393Metagenome194N
F030957Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0302185_100914121F027393N/AVPYGSASTASNWRYLVMTPDGNFQVLLPDGTLVAYSGSAGWQSGTLSAPAPVSLALTMIGTYVLMLECMGNGQTATADEVPYPNLATPVINTYDLSSIVPAIQGIAYDVMGRLWLWTGSNAVAVKPKYDGYILDPNSLAIYLTDTYDSVSFE
Ga0302185_100914122F030957GAGMNTSTQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLNQWAGIAVSSTSLGMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPSEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIFSGTLPSGLSVAYQYTAMPYN
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