NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302178_10310572

Scaffold Ga0302178_10310572


Overview

Basic Information
Taxon OID3300030013 Open in IMG/M
Scaffold IDGa0302178_10310572 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102015Metagenome / Metatranscriptome102Y
F106053Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0302178_103105721F106053N/AMPSASGLSRDQRIRCRDRVVQAARLTLANKDRTHYTEGPQRWDGIKNRRNAEIGQFPEYSDCSSFATWCLWNGLVLRFGLGDIVNGAGWTAGYTGTMLDHGLPVRYPSNVLPGDCVIYGSGPPGVHCAVVVDMVNGTPMVI
Ga0302178_103105722F102015N/AMTGNEHLRFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADMGDSGTAEPPAGDS

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