NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302186_10303425

Scaffold Ga0302186_10303425


Overview

Basic Information
Taxon OID3300030004 Open in IMG/M
Scaffold IDGa0302186_10303425 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010657Metagenome / Metatranscriptome301Y
F021252Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0302186_103034251F021252AGGMADQAERVILEAEETPVLEAVGRANTALDSFEKKSESSHGKVIRISDQTRTSVQRLVASLEKQAETYGKSGVDKLISQRDQLLQRYSREPQAIDAITK
Ga0302186_103034252F010657N/ARDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRSQTASQIAFYNNRRERQWGVSQHNREAVLAAFQARPIVMLKAA

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