NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311336_10050319

Scaffold Ga0311336_10050319


Overview

Basic Information
Taxon OID3300029990 Open in IMG/M
Scaffold IDGa0311336_10050319 Open in IMG/M
Source Dataset NameI_Fen_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058931Metagenome / Metatranscriptome134Y
F060240Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0311336_100503193F060240AGGAGMHSKVKNYALVFCLFVFLFVTIGGGLHMNPGGAFLAAATGTPLMIYAFNRKSKGDCRPEHVPSRLAGNEVRYGSDRSDNPD
Ga0311336_100503196F058931N/AWIELPASVLLFLLVPGDPDSGAVYVLDRKKGTWYTVDFEDEQFGGYSVSQLETLLKDCNFLDLIERPGLWRAGLRWVVMPGMRPETAV

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