Scaffold Ga0119944_1008570

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119944_1008570

Scaffold Ga0119944_1008570

Overview

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1008570 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1574
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005878	Metagenome / Metatranscriptome	387	Y
F093799	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10085701	F093799	N/A	RFYCQPCANKAQNWPDGTFWSLKEQLEYAIDDFAGREKLNVELS
Ga0119944_10085702	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRVKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKQKQYALELAETGSLGRALNLAGFFAKPSGSPKKPIQTTKPQLAEFIKEQRPNDPEPIVWDVTAIAEEFGAEVIDEIPLCNHGPMILKQGNKDGKEYRGWVCSERNKSAQCPARWQRIGSDGNWTFQR
Ga0119944_10085704	F005878	GAG	MINEMHPFKCGPCKKVTPHFYITKYESEIQPDAWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI

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