NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1002063

Scaffold Ga0119944_1002063


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1002063 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3523
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027828Metagenome / Metatranscriptome193Y
F081258Metagenome / Metatranscriptome114Y
F091925Metagenome / Metatranscriptome107Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10020631F081258N/AMTFTFPRLSAGIYEIQKDSNTVGFIRKQSASKWIVTDVVDTPQHVSKTLKDAKDACINLIIFDVVDKTPEGEYNTFAEVDENSVETSTDSSKTLKGKLTCYKQVPGTDKFVEVSRTEFGFAKPTLEPIAF
Ga0119944_10020635F027828GGAMQTLLDKVLMVEELLNEKQLNALRDILYFYKEFQQELYDYPPEDTLFTQTQRELFDIFDI
Ga0119944_10020636F091925N/AMTTISLTSGQILDIILALEEKENTLYDAGDKHTAAYYMNLGNQFQRVYDSLQGVVPENRVANLVLAAN
Ga0119944_10020638F101038GAGVLGCATCSSGTLKEHRPQSVVLYRGGEGRSRSTNSLFFTTMELVNSFPPVDALVEFSNKKLKEFDYVKFGDNVIQFSATAYAVVVGVFSYAWTALQLWWDDNGEAVQVNTIRIVVNLIDFIAAIVIATPKVYRWVKLNSNRLVDSLFFQYTFA
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