| Basic Information | |
|---|---|
| Taxon OID | 3300029930 Open in IMG/M |
| Scaffold ID | Ga0119944_1001598 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hong Kong |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3996 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Pearl River Delta area | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .5 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002009 | Metagenome / Metatranscriptome | 604 | Y |
| F003304 | Metagenome | 494 | N |
| F039993 | Metagenome / Metatranscriptome | 162 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119944_10015983 | F002009 | GGA | MNSPTIEDMGKAAEDIVWRVMGKGSDKSAYGQWFELDRPIHDYHIARAIRHLATAMMQLHKSTPCPDSNGETATDHLERAVVRALFVWAQVKKEVPRL |
| Ga0119944_10015986 | F039993 | AGGA | MKLALSWVCYAIGHVISETILRFGWSYSLYNKLMLLSSDLDDKGVIWKDCK |
| Ga0119944_10015987 | F003304 | AGGA | MKKAVVTQSFGEGWAKIRELTQPRMKAYCERHGQDYISMEKPLAEPSQYTKSAIGNIMATRGYDVVTFFDCDVLIAQDCPDLTIDAGVFSALNEGIFLDRKNGMVKLAETYGAKIKPKFYVNTGVFVISSKVIGVLSLPPLGLFPNHFAEQTWMNIMLHLWDIPLPDLDPAFNCMTSVESHFGLDRYKDAKIIHYAGQSADLDKLAETIKADDKKLVELGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |