| Basic Information | |
|---|---|
| Taxon OID | 3300029930 Open in IMG/M |
| Scaffold ID | Ga0119944_1001066 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hong Kong |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4913 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Pearl River Delta area | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .5 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002333 | Metagenome | 569 | Y |
| F008128 | Metagenome / Metatranscriptome | 338 | Y |
| F053230 | Metagenome | 141 | Y |
| F073444 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119944_100106611 | F008128 | N/A | MQMDPIVVPKLTVSFAVDLEVEYNSFGGKTADEIAEALQDDLDDLLFEVSPNVKGVFTSVTAVGFQE |
| Ga0119944_10010662 | F002333 | N/A | MTQSTLLELNEAQASIYTRTNLRRAYQDFDDSEVAGIYLRDDDCVVVRRDGSQQAYKRDVIKQAFQTYTHRLTDFFSYLGPNYRGPSVWHNNAYIIFKGWYYTHALGHLTANAKLQAHWADRFIHLSDPNKVTALLQSDQTDLGHLVAPDGLWTPSREVDMESDLDEEVPSVQAVARDPYCSCGSFQRQLHGLSGFQAEIQGFKPWCKHLTWFNKYRELLCKRTEIRNACPAYAPDKCVAWWYAPPMDSISNGRFMLLHTKSGAQAPLTHWRNYKPKEVFTQDHAWDLFFNMMDAGYVPFPGVSLPQLKPATKQS |
| Ga0119944_10010666 | F053230 | N/A | MFEAILSSVLPVLKDLLWTAAAALLAFTLNKLQSQFQGG |
| Ga0119944_10010667 | F001018 | N/A | MSQITATKLKELNVIKLYEHYGALERSLPLLTPESQELAKAELEACVALRSEKIDRIYYAMAAHEDAVGRIKKEKELILTAQRHHESQMKALKSLLNYLRRSLPPDTNKITGSNYQFTLVRKKDLTVEINSDPEFWSSEEREKFCIEEQTTITKRIVVRSMSGEILNERIEPADKIIILPNLDALRNAHQDGQPLPSGVKVYQEYSIRSSRIYGKSSVALEASEYPGDILPED |
| Ga0119944_10010668 | F073444 | AGAAG | MQCHQHAVRDFDLQLEMTALEMDMLKDGGEVLPYNEVRMDELEQKKLKLLVGKRFHQNATNAYWYFLEKASK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |