Scaffold Ga0119944

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1001037 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029930 Open in IMG/M

Scaffold ID

Ga0119944_1001037 Open in IMG/M

Source Dataset Name

Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4985
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4985

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	.5
Location on Map

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Source Dataset Sampling Location

Location Name

China: Pearl River Delta area

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F000766	Metagenome / Metatranscriptome	899	Y
F002301	Metagenome / Metatranscriptome	573	Y
F010680	Metagenome / Metatranscriptome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10010371	F000766	N/A	NFRRIVGRGIFTDGSMTISTVTEDDTEYDHITYDENIPAQEVSTTQPELAQEFVAFKFTLYRDATTTSAGPTFKGYQAKATIATPRQRVLRFPVFCYDVETDRFNVVTGYEGRALDRLRALENAEANGDVLTWQDLTTTTGESRQVTIEQLSFTRLTPPDKRFSGFGGVIEVTLRTV
Ga0119944_100103710	F002301	GGA	VEDAYLTEYEALVASLANEYHRKYPMVEALDIQQILWLWFITHTNKYLEWSSLEQKDRDKLIAKSLRNAAIKFCEKEKAKAAGYELLDLYYYDSSVIEAFLPSIIAESYEIPTKIKDLNFKFNKSEPSNDGNNWLVLRSDIANAFYKLTEAKQNVLRIRFSTDNSEWSLVAKDLKTTVDGARMKVQRAINSLIRNLGGWRPYPDEEIQQADEDSERE
Ga0119944_10010374	F000368	AGG	METLKQVSLSWFRAAASAAIALYLAGETDLKVLGTAALAGFLGPVLKWLDPSAAEFGRGS
Ga0119944_10010375	F010680	N/A	MIVELNQEEVRVCTLLAVERWLTKFGSLDKPNYAEGKKLGKLEPELNANIRANVSEWAVAKEYNLTWSVPWYPNSLHKQRKNISDVGNFEVRTIRTQTAIPFWEKDKDRIIFGTKVLDVEYYSRVEIYGQFKGSDYMTPKYRDESINGWRVPIEFLSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119944_1001037

Overview

Ecosystem & Geography

Associated Families

Sequences