NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000755

Scaffold Ga0119944_1000755


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000755 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5828
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006260Metagenome / Metatranscriptome377Y
F007798Metagenome / Metatranscriptome344Y
F009604Metagenome / Metatranscriptome315Y
F010397Metagenome / Metatranscriptome304Y
F019824Metagenome / Metatranscriptome227Y
F023346Metagenome / Metatranscriptome210Y
F039627Metagenome / Metatranscriptome163N
F079812Metagenome / Metatranscriptome115N
F091907Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10007551F006260N/AMETELTIKDKVKNPIIIQHDDLKFDGKNITIPRYWVDSLCEYIKDYKTDGELEADIEDYQAFRQFLWDVQEYKNKGN
Ga0119944_100075511F079812N/AMSTKYVMDGSNRKIGYVNDTGSVIYAHGVNGENVGYYQKSSDTTFDRSGKRYGFGDLTNALIFEASKRF
Ga0119944_100075512F091907N/AMNKTGRKATQVNEITDRTFTIVDLGNANTNVKTPTLRMHIKRSVANGRYSVAGKVKTGKRGKPSIVYTYNAVTTNSQTATA
Ga0119944_100075515F007798N/AMKDITLKQLVRDRNGQPRGMVVATVIDNTIRLGWSHTNTKAGDRFDKCKALIIALGRAENGWGPNTIVPVSTRKVLDKMVDRAVRYYKNVPVTL
Ga0119944_100075516F019824N/AMDKYITDNFTGSIDDLLNHCSQLDTNKVEEQVKAEEKEACIAVIMQECECDAEEAEAIYKDISLAETKQIIDKMVEDGLVYVSGTNEDGEPLFSLTELGKAVREEMEKNK
Ga0119944_10007554F010397AGGAGMNVNEFERTKPVVTMHKINELIQLIEDERIKTEILYKDRVRSLEDISLKLKDMKRSFTRG
Ga0119944_10007557F023346N/AMNKISKNIILTYAKGIRTIQTEQIDPYLNLIEAELIKLFPELKDREDNALNWAYDVMNAESNAEVVETLERLEKIIGEERASNWTCSYCGKNTYNDDVEYLFGTNHISCTLKEDIKNRSHNDPDYILDPNRRKIDDLEKELRETKRSLVNLELQLEHLRRDYHHEPTN
Ga0119944_10007558F009604N/AMIKCGCGNEIHPERYELGYKICLTCGDNSAKRSQKYGYLHFGHKTAGSIVITSKKAFDNYAKVSYRKGKASNMAYASRLSTAF
Ga0119944_10007559F039627N/AMTASFYKTVYQRKFEELPRWKKLAIVEDSERNNWSGILTDFVKAVIEEAEKEYANSKKSESTIPKEFVPELEIKSKKTIKKKS
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