Scaffold Ga0119944_1000701

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119944_1000701

Scaffold Ga0119944_1000701

Overview

Basic Information
Taxon OID	3300029930 Open in IMG/M
Scaffold ID	Ga0119944_1000701 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6027
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015582	Metagenome / Metatranscriptome	253	Y
F038202	Metagenome / Metatranscriptome	166	N
F041760	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100070112	F015582	N/A	MSNINNIDPELLAEQAEDAKYLQELNHYVNTLATPSAEAVALYRAKLSMLEDIHTEIRNKYPGFMPEYDPSMEAELNQDLGKYQEHTYSISSRDMRSEN
Ga0119944_10007012	F041760	N/A	MTKVLAVKYPSSTDRVRQTVDHLRQVFDVPDVNKIKELFGTLLFNDNNLYRYNYCLVKYNNELFVVEPVDLDKRTYVRKKVEYHPLQNMV
Ga0119944_10007019	F038202	N/A	MKVKVTDIVYDTDIDDDSTTFVLNSELPSEMIVEVDGIIDIESEIADAISDTTGWCVHGYNYEIL

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