| Basic Information | |
|---|---|
| Taxon OID | 3300029930 Open in IMG/M |
| Scaffold ID | Ga0119944_1000292 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hong Kong |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8709 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Pearl River Delta area | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .5 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002827 | Metagenome / Metatranscriptome | 527 | Y |
| F041644 | Metagenome | 159 | Y |
| F042880 | Metagenome | 157 | Y |
| F052570 | Metagenome / Metatranscriptome | 142 | N |
| F053128 | Metagenome | 141 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119944_100029210 | F041644 | AGG | VGYQGERGRESVSLDFILDRLTSVQVGGFWALAQVIIYALVIYLGLVIISKITDKREGKK |
| Ga0119944_100029215 | F042880 | GGAG | MSSYTTIGELIEHLKGEDLSAPIIYQYYLAEHFEISEEVFGQVARDFDSLIPCSDSYEVISKEIESKREEVNA |
| Ga0119944_100029216 | F052570 | GGAGG | MRKMKYKLPKGVELVIDDYDAERKDRQDSAFYTWGGSHRVATLTYQGREYYVECVGEMRIIYKGDVLRYCDRLIKAGIKNDKDLAKIEESGGEWINNSWFEIYDESSGEYTGEVYHEVKDAIETVANWIIDKEAVNV |
| Ga0119944_100029218 | F053128 | AGGAGG | MNKGYFVIDNQGTGWKEGILWKSIKEIADSIRDYDDFIDNYEGENLSHSQVCQLWEFEYHRLTPANCVKYRIKPSDLQEEESNE |
| Ga0119944_100029220 | F002827 | AGGAGG | VNKEYYQAKADLCRDLAIKQMVSGNAKEAGDNLIRMVNALNQINLINYKEEKGNE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |