NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302141_1011018

Scaffold Ga0302141_1011018


Overview

Basic Information
Taxon OID3300029919 Open in IMG/M
Scaffold IDGa0302141_1011018 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2499
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019187Metagenome231Y
F055576Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0302141_10110181F019187N/AMETIQVLKSALDQMRHFLWFYMQVVTSDSEMGEKFRQTLRQDVPVRPPEMEQQFQSATDAIMLRYLADSKFRKPN
Ga0302141_10110182F055576GGAMDRENRESMDDIHLRILRVTEDLRVIQRELNCAAMQAPTDPELM

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