NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311326_10149543

Scaffold Ga0311326_10149543


Overview

Basic Information
Taxon OID3300029917 Open in IMG/M
Scaffold IDGa0311326_10149543 Open in IMG/M
Source Dataset NameI_Bog_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1256
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040983Metagenome160N
F044277Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0311326_101495431F044277N/ALMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKLSDITIACQIYRSSNEADLITAARVPLSGLQHTRLIGSRLQYVTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEESLKLYEVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSQFYPYAMGQ
Ga0311326_101495432F040983GGAGVDFYRDISPNIDLRDELHTVLHGSEELAGQGRTVILRRLSNTTCPGCWDPKTGGSTRPNCLYCQGEGYQFIETRELMALFRGVAPVYKPGVLATGEYPQNSMGYTDMNRCTAYVEVFRDDGSQVYPDYERYTIQTAKAYDKLYEVKVDPEGEPIIDSSGRFTRTAKWKVLSVVPTHGDNGRVEFWELGL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.