NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311361_10407024

Scaffold Ga0311361_10407024


Overview

Basic Information
Taxon OID3300029911 Open in IMG/M
Scaffold IDGa0311361_10407024 Open in IMG/M
Source Dataset NameIII_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1424
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057845Metagenome135N
F100222Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0311361_104070241F057845N/AGIPVGNHKAGMSKNPFGGYDRLDKCNLQGPSILGGLLIDVFSDVPGERTMICKMFLDDCNNYVNYALAAQNGTSLDQFFYASEFLLRVRASKPETWQGARLMRTTYFDEDLGKRVTRVQALTDEQLRMSCADYLWSLMEMPMEFEDFVAALRAERRKRLQKSLEQVDEFIALMNNPSLSRNILHGETIPLKLLSQSPEDILTDPTINPVDLCRLVRYQPRNRKRSPGSPAVHCVRARRIHACEKKPVVRQTQPAKGDLFACLETNPPDSADSAGRCTGGLSA
Ga0311361_104070242F100222GGAGMRRPSAKQLVRTLAFDFPVILDLSKPSVTLHKNGKYLLFKPNDIAAADILRELKVRMECNKMHLTSFFGFDEEETVEIPVANGVAKTHRHKQVSDWGRVELWKHLEGDVNKHPLCDMLRSYGVEVGTSPTLKGYILKEHRRRVLEEFPYPASPIVKDDVSLF
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