| Basic Information | |
|---|---|
| Taxon OID | 3300029910 Open in IMG/M |
| Scaffold ID | Ga0311369_10340211 Open in IMG/M |
| Source Dataset Name | III_Palsa_E2 coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1324 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. SPB78 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Abisko, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001173 | Metagenome / Metatranscriptome | 757 | Y |
| F003545 | Metagenome / Metatranscriptome | 480 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311369_103402111 | F001173 | N/A | DQPPGEIGQWIEDLAAAHRTFAGTLAERQTLTLPSEDPDYADLGQAFPPWPGPAKDAILQPPKPEITPSPQVLQRAADRDAEPEAAD |
| Ga0311369_103402112 | F003545 | AGGAGG | MTTLAITGMGLTGVLRLTWVHDNLAHVLEHCEADEPSGTWTGLAGPGYGLALGADVDNPVLRQLTDGSEIADLIWEAPDELAADHAQVFQAAMRAYSAADSERAEQLWEDLRAIWSHAWSANYAVLELMQGTGLTRFSPLKPQHWVVASFEHHTSPHGLPRPHVHNIVITSLTTGV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |